NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1045168

Scaffold Ga0181359_1045168


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1045168 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1703
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027756Metagenome / Metatranscriptome193N
F032548Metagenome / Metatranscriptome179Y
F036564Metagenome / Metatranscriptome169N
F044916Metagenome / Metatranscriptome153Y
F064403Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10451683F044916N/AMGKKKVDKSRIEKGLEKEEKTFALMAKKIVDAIKDEKELRAFAKISLETLYKDNPNLFADHAKLKLKKK
Ga0181359_10451684F064403GGAMINPRSKILSDLKRAYLKEHPVSLVDRILGLLNNLTDFQLCQLYSEKYETNPKYIAEQFEFKF
Ga0181359_10451685F036564GGAGMKLGRICVDLNYIVDMDNDEMVRHATEALYEDLMQGIKYGDLTNWIRVSEDKNATEDMIPEFLLDKEND
Ga0181359_10451686F032548N/AMKHNQEMEKAIKILEELVNQADEDCPQDCRTMHFVNALEEASEFIMEYKNTK
Ga0181359_10451687F027756N/AMKLKDLIDRKILYLNFPINRYAVQEGKVTEISPSEKCIKINADWHLISNIRIIELFTEKERPTLGFN
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