NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0181359_1042688

Scaffold Ga0181359_1042688


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1042688 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1757
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F009883Metagenome / Metatranscriptome311Y
F010982Metagenome296N
F012452Metagenome280Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10426881F009883GGAGMNEISIVITCLIAGTLWAVMAYSVGYKEGQRQGYTRGRAVSRHIAARQKAAK
Ga0181359_10426882F012452AGGCGGMAAFLDGYEGNKERTDRWIKTYPEGRLEATIVNFDADKGSILVRAAAWRNQTETEPAGIDFAFGYQAAYNANMKRWFVEDTVTSALMRVMALVMGGAEKATHEVMASIKAPAADYDYWTTKHGDVPSFGTEQDLLDAEQKQNAVGSIADVTSHLGNEMMSQVPECSHGARIWREGISAKTGKAWGNYSCIERKPNQCEPVWYVFTGRGKWEPQI
Ga0181359_10426883F000403GGAGMSDYMEIINPQTRIARLYFQGEVIQEYKVEQCDKCSKLTKFDSFGYQIGYDRTEKIIWFCGDCR
Ga0181359_10426884F010982N/AMIMVRLSRQDEVLAHTTGLARESRYGSNPKFMGNKGNFHNGVVVHSEGVGAEIAVARYFGVDDFKPTVNTFKNEPDVYWNGIAMEVKQTSHRNGHLIITDDDRDTDIAVLVVGESPSYYVVGWIPVGVAKRPRFASAMGGYWVSQINLQPIETLRKSTHANT
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.