NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1032673

Scaffold Ga0181359_1032673


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1032673 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2011
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001968Metagenome / Metatranscriptome610Y
F004314Metagenome / Metatranscriptome444Y
F029725Metagenome / Metatranscriptome187Y
F068809Metagenome / Metatranscriptome124Y
F071172Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10326732F071172GGAGMTLTSQQLDQLVENYAERIVDEMDTKCLIQFVYDTIVENMAGKSEEDVLNEIANVYDEDVIEELIESVTVA
Ga0181359_10326733F029725N/AMTNRTELEWFLKEKCREDADLLDTVISEYVWNLSESKLTELEDFLSNNFGDD
Ga0181359_10326734F068809N/AMNYLTPNDLNNLIRLVEDNNQYNDDEDKEFWNDILIRLNQTYRHCLDD
Ga0181359_10326735F001968GAGMFDELWSEIQDMPGEIFDLDIPELKDEKFDVNEYLNANYDY
Ga0181359_10326737F004314N/AMYDDYDLDYTYASDYSYDLDEYTQDLDEDYARDGQDYEALAYRHYA

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