Scaffold Ga0181359_1032673

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1032673
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2011
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001968	Metagenome / Metatranscriptome	610	Y
F004314	Metagenome / Metatranscriptome	444	Y
F029725	Metagenome / Metatranscriptome	187	Y
F068809	Metagenome / Metatranscriptome	124	Y
F071172	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10326732	F071172	GGAG	MTLTSQQLDQLVENYAERIVDEMDTKCLIQFVYDTIVENMAGKSEEDVLNEIANVYDEDVIEELIESVTVA
Ga0181359_10326733	F029725	N/A	MTNRTELEWFLKEKCREDADLLDTVISEYVWNLSESKLTELEDFLSNNFGDD
Ga0181359_10326734	F068809	N/A	MNYLTPNDLNNLIRLVEDNNQYNDDEDKEFWNDILIRLNQTYRHCLDD
Ga0181359_10326735	F001968	GAG	MFDELWSEIQDMPGEIFDLDIPELKDEKFDVNEYLNANYDY
Ga0181359_10326737	F004314	N/A	MYDDYDLDYTYASDYSYDLDEYTQDLDEDYARDGQDYEALAYRHYA