Scaffold Ga0181359_1032375

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1032375
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2021
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009749	Metagenome / Metatranscriptome	313	Y
F023522	Metagenome	209	Y
F024537	Metagenome / Metatranscriptome	205	Y
F048947	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10323751	F024537	N/A	MAMKNLEKEILDELGTKMQSEIDREVMWGMLKSLGWRRVMLDRFTDNNHAVDITYWLAEHCNHAFERRGADFIFESEVDAVNFALRWK
Ga0181359_10323752	F048947	GAGG	MNSAQRRRGLREFRKLEHSVLIDGKAHQAAGAWCLTQFGKRWEAIGNTDGAWTMFWAGRNDFDKYVFHFVEEQDKLMFILKWS
Ga0181359_10323754	F023522	GAGG	MMYPTSTTLRAQRAEEHLKVDQRLMQLLDTYHVIVLKDEDFAEKLTWCLENCQNKFRDLSDSNGRAWYFQNEQDATMFAMKWA
Ga0181359_10323756	F009749	N/A	MYSWILIVAMYSPAGDFIGKDTMKFESQKACEAVKVQLPNLDHLMRVKHKGLCVTRDHWEGKKQMPGVAYD