Scaffold Ga0181359_1025134

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1025134
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2276
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C493 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035302	Metagenome	172	Y
F049622	Metagenome	146	Y
F065780	Metagenome / Metatranscriptome	127	Y
F082668	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10251341	F082668	N/A	MSESLAAITVALISTIGVVLVGLMQLFKKEARENARVNNEDHAIVQQQLRMIFKSVGRVDDKLDKHLDQHTEGTTSG
Ga0181359_10251342	F035302	AGAAGG	MKRPYTGNTDGLAEGERKGLAVFIKELCALYPALWNNGSYVNRSMRGKQGSLSVHATGRAVDLSFRYMAKEQRGIPEGGRKQAMEAIDFVVKNADVFGLEAILDYFPMPQGRGWRCDRGSWSVYTKPTIHGAPMGDWVHFEISPVMADDPDAMREAFAQAKQLVA
Ga0181359_10251343	F049622	AGGA	MKKAQDIAQRLLSLFMANALAIVTGSAIVGGIPVWKAAALAGFTAVAQVAEKLAKASVDGSLTAQEISDAFGGNGKPVVKKKAAK
Ga0181359_10251344	F065780	AGGA	MKKVLNYLADNTWTWAGTGLVLITLSGTTFKQALTLTAIAIVIHSVITLGTKEDQ