NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1021474

Scaffold Ga0181359_1021474


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1021474 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2446
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009516Metagenome316Y
F014495Metagenome / Metatranscriptome262Y
F093500Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10214742F093500GGAMTEEEIDAFENYDQRAEATLAYRLMEHLAFRGIITDDEVCHLRYPPCELIIDAEAAWDE
Ga0181359_10214745F009516AGGMSRPMFYPMGTLEIGDVGTMPATDKGAAKRTSRNVSQYGIRNGKAFKCRTVGGVTFITRW
Ga0181359_10214747F014495GGAMIKIPQQAAPLGRNYRVSSESAFPLRDINGKTWAERRKEKEQGK

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