Basic Information | |
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Taxon OID | 3300019784 Open in IMG/M |
Scaffold ID | Ga0181359_1017010 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2709 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (50.00%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
Associated Families | 7 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 43.1881 | Long. (o) | -86.344 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F030670 | Metagenome / Metatranscriptome | 184 | Y |
F032536 | Metagenome / Metatranscriptome | 179 | Y |
F034827 | Metagenome / Metatranscriptome | 173 | Y |
F048123 | Metagenome / Metatranscriptome | 148 | Y |
F062447 | Metagenome / Metatranscriptome | 130 | N |
F078229 | Metagenome / Metatranscriptome | 116 | Y |
F104482 | Metagenome / Metatranscriptome | 100 | N |
Protein ID | Family | RBS | Sequence |
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Ga0181359_10170101 | F062447 | AGGAG | MKHKIFWEKNSRVKGVVPSAQIINKTSTDKFPCDAVTIRMYNLNDKNPTATAYFYGKEAQGSSWNGSNYTYAETKLMVTFDKDKEGYSFNGGAKSFSLQDIKEVLDSVRETLNKL |
Ga0181359_10170102 | F032536 | GGA | MSERKTFEELMRSFRFHKNPILNWFLGEVNYYSHTYLNVKWDLKNKLQKLIRGYSDSDCWNLPQSTAKFMLPRIKHLRQNYHSLANRHHLIIDDKIVPYVGKEDDFVFNTTLGCHIDKTTGLEISLDQKEYEYVLDEIIFALQTIVDEDDINVSLEEVYEVYPKGFDPIKDRQMFLEKQEDGTYLVEFERKENIQPDYSKLNKAYERQRNGLMLLGLYFKDLWD |
Ga0181359_10170104 | F104482 | N/A | MKKQKNKMTSEEFEKAMKAQGRLVSKVYYRITFKGVGLYILNSFQFKLLPKFFYMNGKYFTEFGFNWLGWIFEFQWNR |
Ga0181359_10170105 | F048123 | GGA | MKPRYDFTKGKLISYDGEIIEFAGSAVVDKYPDQVQEVMDLFDFKKGEYLVTDESSIGDFEKQNINPKKLQKFKKKYKFSLTNNSNISKIAERMYNFRPF |
Ga0181359_10170106 | F034827 | N/A | MKYTITSQDKEALTEFDQIKEGEVFSFFDPESVQRGNHAIYMKIKVPNTTSVNILDLGDGKAYDFSSKKRNTLNDPDEQQGNRVYKLNAKINIVIL |
Ga0181359_10170107 | F078229 | N/A | VSKIKYTYYIEQDKDKDGNLVQGWSIYKTPLVKTIKVKTFKKLKDADAFLDNYESN |
Ga0181359_10170108 | F030670 | N/A | MKVIRYIKELEDEFGEPLDKWAVYEEIQKPNYPHANFIDAKIVKTFTSPYHARNWMENDGKRIN |
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