NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1017010

Scaffold Ga0181359_1017010


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1017010 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2709
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030670Metagenome / Metatranscriptome184Y
F032536Metagenome / Metatranscriptome179Y
F034827Metagenome / Metatranscriptome173Y
F048123Metagenome / Metatranscriptome148Y
F062447Metagenome / Metatranscriptome130N
F078229Metagenome / Metatranscriptome116Y
F104482Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10170101F062447AGGAGMKHKIFWEKNSRVKGVVPSAQIINKTSTDKFPCDAVTIRMYNLNDKNPTATAYFYGKEAQGSSWNGSNYTYAETKLMVTFDKDKEGYSFNGGAKSFSLQDIKEVLDSVRETLNKL
Ga0181359_10170102F032536GGAMSERKTFEELMRSFRFHKNPILNWFLGEVNYYSHTYLNVKWDLKNKLQKLIRGYSDSDCWNLPQSTAKFMLPRIKHLRQNYHSLANRHHLIIDDKIVPYVGKEDDFVFNTTLGCHIDKTTGLEISLDQKEYEYVLDEIIFALQTIVDEDDINVSLEEVYEVYPKGFDPIKDRQMFLEKQEDGTYLVEFERKENIQPDYSKLNKAYERQRNGLMLLGLYFKDLWD
Ga0181359_10170104F104482N/AMKKQKNKMTSEEFEKAMKAQGRLVSKVYYRITFKGVGLYILNSFQFKLLPKFFYMNGKYFTEFGFNWLGWIFEFQWNR
Ga0181359_10170105F048123GGAMKPRYDFTKGKLISYDGEIIEFAGSAVVDKYPDQVQEVMDLFDFKKGEYLVTDESSIGDFEKQNINPKKLQKFKKKYKFSLTNNSNISKIAERMYNFRPF
Ga0181359_10170106F034827N/AMKYTITSQDKEALTEFDQIKEGEVFSFFDPESVQRGNHAIYMKIKVPNTTSVNILDLGDGKAYDFSSKKRNTLNDPDEQQGNRVYKLNAKINIVIL
Ga0181359_10170107F078229N/AVSKIKYTYYIEQDKDKDGNLVQGWSIYKTPLVKTIKVKTFKKLKDADAFLDNYESN
Ga0181359_10170108F030670N/AMKVIRYIKELEDEFGEPLDKWAVYEEIQKPNYPHANFIDAKIVKTFTSPYHARNWMENDGKRIN

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