NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1011307

Scaffold Ga0181359_1011307


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1011307 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3203
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026209Metagenome / Metatranscriptome198Y
F036073Metagenome / Metatranscriptome170Y
F046819Metagenome / Metatranscriptome150N
F047479Metagenome / Metatranscriptome149N
F080837Metagenome / Metatranscriptome114N
F102437Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_101130710F102437AGGAGMTSKLRAFEDTVLSVREPRELKGSLICSIQDSDIPTLDKRKLIIAIDRCNTINDLQRLFYNALLKFEGQGVI
Ga0181359_101130713F036073AGGAGMSETIEQTKPYDADLHCKKIAWMVKNSPDWDYEKQTLEEYLETVPEYPTDEQVKDFNHLYVEPFVPFKKEKPYQGDQVNEAS
Ga0181359_10113072F046819AGGAGGVNNFKPYTQTDVVSFYKELVKRWADDQLDQLADYPITKRKQMLVELTQCSLEVFREDILEEIRSRKISYLVD
Ga0181359_10113073F047479AGGAGMKNKLYLQIDLYNGKSKWITKKDFLNYTVGDEYDGKDSRGYYMTYKLDDGTVEKEYYNWKDNWESIKRTNTHTVYKGEECMLIDFSNKGAK
Ga0181359_10113077F080837AGGAGMNKKTNNKKHEFFPKMMTTQVLKPYLKEAKRVGYTVSGSVRDGFIAVVTDACELHPAGEVVMRGVKKPGVNVWIMGFNTLYWQEPTIAECLAESKWYAEMEGASK
Ga0181359_10113079F026209N/AMCMMKNRTVTNEIYDEDVCGGEWRQVTVPAIGGIKWHKREQLGDQKQSAYYDHSFYKVPFYGPYDQGRIHKALSKLYPARFNKFGGYTTVSTVEQLDAEHIKVEMCYHIGD

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