Scaffold Ga0181359

Basic Information
Taxon OID	3300019784 Open in IMG/M
Scaffold ID	Ga0181359_1011307 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300019784 Open in IMG/M

Scaffold ID

Ga0181359_1011307 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	3203
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (71.43%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

3203

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (71.43%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.1881	Long. (^o)	-86.344	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

43.1881

Long. (^o)

-86.344

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026209	Metagenome / Metatranscriptome	198	Y
F036073	Metagenome / Metatranscriptome	170	Y
F046819	Metagenome / Metatranscriptome	150	N
F047479	Metagenome / Metatranscriptome	149	N
F080837	Metagenome / Metatranscriptome	114	N
F102437	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_101130710	F102437	AGGAG	MTSKLRAFEDTVLSVREPRELKGSLICSIQDSDIPTLDKRKLIIAIDRCNTINDLQRLFYNALLKFEGQGVI
Ga0181359_101130713	F036073	AGGAG	MSETIEQTKPYDADLHCKKIAWMVKNSPDWDYEKQTLEEYLETVPEYPTDEQVKDFNHLYVEPFVPFKKEKPYQGDQVNEAS
Ga0181359_10113072	F046819	AGGAGG	VNNFKPYTQTDVVSFYKELVKRWADDQLDQLADYPITKRKQMLVELTQCSLEVFREDILEEIRSRKISYLVD
Ga0181359_10113073	F047479	AGGAG	MKNKLYLQIDLYNGKSKWITKKDFLNYTVGDEYDGKDSRGYYMTYKLDDGTVEKEYYNWKDNWESIKRTNTHTVYKGEECMLIDFSNKGAK
Ga0181359_10113077	F080837	AGGAG	MNKKTNNKKHEFFPKMMTTQVLKPYLKEAKRVGYTVSGSVRDGFIAVVTDACELHPAGEVVMRGVKKPGVNVWIMGFNTLYWQEPTIAECLAESKWYAEMEGASK
Ga0181359_10113079	F026209	N/A	MCMMKNRTVTNEIYDEDVCGGEWRQVTVPAIGGIKWHKREQLGDQKQSAYYDHSFYKVPFYGPYDQGRIHKALSKLYPARFNKFGGYTTVSTVEQLDAEHIKVEMCYHIGD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181359_1011307

Overview

Ecosystem & Geography

Associated Families

Sequences