Basic Information | |
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Taxon OID | 3300019784 Open in IMG/M |
Scaffold ID | Ga0181359_1011307 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3203 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (71.43%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 43.1881 | Long. (o) | -86.344 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F026209 | Metagenome / Metatranscriptome | 198 | Y |
F036073 | Metagenome / Metatranscriptome | 170 | Y |
F046819 | Metagenome / Metatranscriptome | 150 | N |
F047479 | Metagenome / Metatranscriptome | 149 | N |
F080837 | Metagenome / Metatranscriptome | 114 | N |
F102437 | Metagenome / Metatranscriptome | 101 | N |
Protein ID | Family | RBS | Sequence |
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Ga0181359_101130710 | F102437 | AGGAG | MTSKLRAFEDTVLSVREPRELKGSLICSIQDSDIPTLDKRKLIIAIDRCNTINDLQRLFYNALLKFEGQGVI |
Ga0181359_101130713 | F036073 | AGGAG | MSETIEQTKPYDADLHCKKIAWMVKNSPDWDYEKQTLEEYLETVPEYPTDEQVKDFNHLYVEPFVPFKKEKPYQGDQVNEAS |
Ga0181359_10113072 | F046819 | AGGAGG | VNNFKPYTQTDVVSFYKELVKRWADDQLDQLADYPITKRKQMLVELTQCSLEVFREDILEEIRSRKISYLVD |
Ga0181359_10113073 | F047479 | AGGAG | MKNKLYLQIDLYNGKSKWITKKDFLNYTVGDEYDGKDSRGYYMTYKLDDGTVEKEYYNWKDNWESIKRTNTHTVYKGEECMLIDFSNKGAK |
Ga0181359_10113077 | F080837 | AGGAG | MNKKTNNKKHEFFPKMMTTQVLKPYLKEAKRVGYTVSGSVRDGFIAVVTDACELHPAGEVVMRGVKKPGVNVWIMGFNTLYWQEPTIAECLAESKWYAEMEGASK |
Ga0181359_10113079 | F026209 | N/A | MCMMKNRTVTNEIYDEDVCGGEWRQVTVPAIGGIKWHKREQLGDQKQSAYYDHSFYKVPFYGPYDQGRIHKALSKLYPARFNKFGGYTTVSTVEQLDAEHIKVEMCYHIGD |
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