NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1007755

Scaffold Ga0181359_1007755


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1007755 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3675
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006220Metagenome378Y
F010398Metagenome304Y
F011760Metagenome287Y
F013084Metagenome274Y
F018927Metagenome232Y
F071169Metagenome122N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10077551F071169AGGMSSIEVQVNVEELDVVRRKLSFQLNKDLTSEETVKFLIEREFNIAKKIPLAKKSPNRAEKSDIKECIYNGSTSGEAMKKLNVSRSTFFRHKAKERKLLEESE
Ga0181359_100775510F010398N/AKFIFLTYIQYMLYYSCKELEMEISIQGVTKVNYELVIDEDVFNEACEEAGLDPANFKKFTKDDWDELNPHLVQAVVDNESDIDYTEIHVETSVFADTLTIDDSDNVTTVYYDKNRKADSVEIQ
Ga0181359_10077552F006220N/AMKKFKKFIEELAIASGTEMMRASQMRPSTFKDKSKYSRKQKHKKGSENE
Ga0181359_10077555F013084N/AMGIMNALELMAEAKETAIYRGHNVKYWNVLGGDCYSLECKDCKMSVMVKENPLPNEINVGGEAVALNCVKPVKEKKLRKK
Ga0181359_10077557F018927GAGMYTHIVISRHLAVDGTTTFYVIEKSKNSSSIIWNGTNKQAAYQVAYRNARKENLPLYDTQYRPEVDKNGVKHIIPIGNELLEVNN
Ga0181359_10077559F011760N/AMENTTTQRMVMRVRLEDVSDRSSCIGYVGQGTWFDGKSFIVTQYKANPSSFYFFVYNDFVPDYNYFNSMNSGFGNEIYQLNPDNGNFSGKTYIYSSKLDKMFEPYAITPVVESPTFLFEI
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