Basic Information | |
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Taxon OID | 3300019784 Open in IMG/M |
Scaffold ID | Ga0181359_1007755 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3675 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (50.00%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 43.1881 | Long. (o) | -86.344 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F006220 | Metagenome | 378 | Y |
F010398 | Metagenome | 304 | Y |
F011760 | Metagenome | 287 | Y |
F013084 | Metagenome | 274 | Y |
F018927 | Metagenome | 232 | Y |
F071169 | Metagenome | 122 | N |
Protein ID | Family | RBS | Sequence |
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Ga0181359_10077551 | F071169 | AGG | MSSIEVQVNVEELDVVRRKLSFQLNKDLTSEETVKFLIEREFNIAKKIPLAKKSPNRAEKSDIKECIYNGSTSGEAMKKLNVSRSTFFRHKAKERKLLEESE |
Ga0181359_100775510 | F010398 | N/A | KFIFLTYIQYMLYYSCKELEMEISIQGVTKVNYELVIDEDVFNEACEEAGLDPANFKKFTKDDWDELNPHLVQAVVDNESDIDYTEIHVETSVFADTLTIDDSDNVTTVYYDKNRKADSVEIQ |
Ga0181359_10077552 | F006220 | N/A | MKKFKKFIEELAIASGTEMMRASQMRPSTFKDKSKYSRKQKHKKGSENE |
Ga0181359_10077555 | F013084 | N/A | MGIMNALELMAEAKETAIYRGHNVKYWNVLGGDCYSLECKDCKMSVMVKENPLPNEINVGGEAVALNCVKPVKEKKLRKK |
Ga0181359_10077557 | F018927 | GAG | MYTHIVISRHLAVDGTTTFYVIEKSKNSSSIIWNGTNKQAAYQVAYRNARKENLPLYDTQYRPEVDKNGVKHIIPIGNELLEVNN |
Ga0181359_10077559 | F011760 | N/A | MENTTTQRMVMRVRLEDVSDRSSCIGYVGQGTWFDGKSFIVTQYKANPSSFYFFVYNDFVPDYNYFNSMNSGFGNEIYQLNPDNGNFSGKTYIYSSKLDKMFEPYAITPVVESPTFLFEI |
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