NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1007534

Scaffold Ga0181359_1007534


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1007534 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3711
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009887Metagenome311Y
F024787Metagenome204N
F026555Metagenome197N
F027846Metagenome / Metatranscriptome193N
F033425Metagenome / Metatranscriptome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10075342F027846AGGLELVKYDKQSGAYVDEKRKHFIKASLIRQHAKKSIGARQIRGRLSAKMVEAYWLDKFKEVVKYEL
Ga0181359_10075343F024787AGGAMNSEIYGWLITITLFTLVALLIGVTWMVAVENGYDKGFKSGYKRGLQDAKQSTVKVEKFTVRTHPSMRQKMLEADNEYLMEKVVNLWDRENK
Ga0181359_10075345F009887GGAMGDMEMIGADGIRATFTDSGVELDIVPLNQCCEWCNDPRMLNINGVRKCVGCGCVNHIEYKPHE
Ga0181359_10075346F026555N/AMSKFDYHKAMREGHGYNLYVADLLQHFGVPKVDVPAFSIATTHDQIRDKTLNEKDVIVDDLVLEIKSSSRSFTNADDFPFNPVMIDTVSGFDNKIIKPFAYVMISQITQGVFVIPTSTKYDWTIRTYWDAERQIEDQFYMVQKRHCRPFIEMVDVLLERANERTNQMQ
Ga0181359_10075349F033425N/AVRNRSMAIITSQVTVTTTSQSIISVDNVSRDVLLHAKHAINIGNSGVTSSNGYLLDNGDEVRLTLAEGEDLWAVASTGSGTLHVLVSKVD
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