Scaffold Ga0181359_1006717

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1006717
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3861
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006138	Metagenome / Metatranscriptome	380	Y
F019102	Metagenome	231	Y
F025225	Metagenome	202	Y
F026543	Metagenome	197	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10067171	F006138	N/A	PAATIGTAGLVFGLTAEAGIGLVQSFSEARSVEKNEVKNNQGDIVAIGYFNPTTAYSLSVAITGSYNVTAGAALSALANATTLGTTRIDSITLNKSNDAFVTLDISATGYPNVT
Ga0181359_10067172	F026543	N/A	MEGIAYWGTTNIKVASAVAGAGGKLRRLDPVSRTIKEDGSSQVTFWFEAGGKGAEVRAEMECPWSEMKCPEESPIRYVRAALENRETLLGLVKRATSIRIIERGGQTLLVSENATSEQKRAMLRHL
Ga0181359_10067173	F019102	AGG	MNISLDEELNSAFIAPSKEYMGEPLANYTEGSRLLLMQVRDDADSSVYFIWSFIFIHIQLFKNRKEATKLAWDRDLFREKLFEYIDGKTEEDRAVAMKIVSSMIDEASKGRVDIIATPGQGELGND
Ga0181359_10067174	F025225	N/A	MLQIDLLNQAKFVHKLQQFAKETRRNMAKVINNQLGNVAVTAIGTTYRTNASQIASEIQRVEGKVITKKVFKPFGLTKSGKIKKRKIGEYAVGYKAKSVNYAGTYKLVNWLLKNRGLPTLGKTKLGTGGLGMGTEPGTIGALARRLVAGRKSSVNYIRNGWAAAADVFGKRPNLTRGDYSKKAIMRLGGGTKADGTKAQMEGMIFNRAGDLDTRFYPVRKRAMSGAVKVGMPGLKMAIEKVIRKMNVELGDINKKTSDKLGL