Scaffold Ga0181359_1006162

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1006162
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3979
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001097	Metagenome / Metatranscriptome	780	Y
F001713	Metagenome	648	Y
F059761	Metagenome	133	Y
F060706	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100616210	F001097	GAG	MNFEWPTNDFSRIRTLQGLRSERVDTQVQPKEIDDWLNQSVALVAGCVRGLGTNQRKVRYFAFEGQNDEVTK
Ga0181359_10061623	F060706	N/A	MSKLVRDDNGQLTQIYELGTTQVMTVTASSVQSSAVAAGCTIIRLANSSTAHAHFQIGSNPTASLTTSPMLPANQVGYFKVNGGDKVAVIRGGTATDISITQIV
Ga0181359_10061626	F059761	AGG	MTELLKAFGWRKRQANEVVEKIRNDTLEEVALEFDRMKAFGDTSHSFATFVRGMKVCPPCNGNCNQGRSCPAR
Ga0181359_10061627	F001713	AGGA	MKYEFDTTTGEGSVIVTVVMTYETDEEGTYNENIDEVWFEGRNVMGIFTDQQFKELEIEGCMRLSKHILEEADEAKIAAYEG