Scaffold Ga0181359_1006076

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1006076
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3997
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003601	Metagenome / Metatranscriptome	477	Y
F077223	Metagenome / Metatranscriptome	117	N
F091890	Metagenome	107	Y
F103180	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10060761	F077223	N/A	MQFFAAFKSIIPEFHAYADEDKRYNIGATWTDDQGLRDYHNLEMRYVHNSEKLALQGDPQPDGSWKYVEPNGTVHVISAERARHFMETTQAHATMMCGMLERLKDAGLYDKFIDTDASPA
Ga0181359_10060763	F003601	GGA	MDYTDDQLLAMAMANIGEYITDNSPQYILIEDDPRNEDDYDTWDYGTEPLPHDHTWQHASIDVSVSPSEAD
Ga0181359_10060766	F103180	N/A	MIGFSLEFKRWYFVLRGPKGRVYLATGFAKRMPVMTPKGTYTLDQCIGTWPGDETDEELLDTLRSIR
Ga0181359_10060767	F091890	N/A	ETAVVDDMRLLYRATRFDPEEWAPALCQATIELDPEEPIPLDEDGFCSYLDQLDPLWQLLDVTDDY