Scaffold Ga0181359_1005257

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1005257
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4202
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001272	Metagenome / Metatranscriptome	733	Y
F002621	Metagenome / Metatranscriptome	542	Y
F014610	Metagenome / Metatranscriptome	261	N
F037116	Metagenome / Metatranscriptome	168	N
F061810	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100525710	F014610	N/A	PMGTDSLVIKGERWTRQPVARFGVTGFAREAELKDKVKQGFSRMEDRQGTRFESTFSKNQIRKIWDI
Ga0181359_10052572	F002621	GAG	MCNMAKHLMISRMIWLAVLPICLGCQQTKVVLVPSGDPVMLAKPTTASVYGFDSDKKLVGPSKVVLPAGWYVLPKN
Ga0181359_10052574	F037116	N/A	MEPTNSSTSPGLSLAAAAGATAASFLPILTDWVRLVTAVVGLLCACYGAYKLFKSK
Ga0181359_10052575	F001272	N/A	MITIELTQEQANSLLQLIDIAIKAGGYQNAKVGVPLADIILSAAQPKSE
Ga0181359_10052578	F061810	GGA	LASSGSGGNVTPADLPILRRDLLQEDEFFVLQEDGTGKIVLSFGTYDRMATEQGTDLILTEASDKFILTVY