NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1004039

Scaffold Ga0181359_1004039


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1004039 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4605
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (8.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000716Metagenome / Metatranscriptome923Y
F053753Metagenome / Metatranscriptome140Y
F098653Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_100403911F053753N/AMIMNHQLKFGYSQLGYNILVKLNCKLSSADAVSLEKEYPEICTMQSRNGYRIEGCFNTKKDNFYCYTKLEDFKLSLALKLNDYKINKLIDKNQSLLNQANFELNIANLDEL
Ga0181359_10040395F000716AGGGGGMSLSILFKINIYIMEKLKQDLQKYQTNSKTYIKYDTDGYNQYQNYLYKRALHGLNAMTEKEIATMCSKKKQRIINVYKRAQVVINKLKQQATISYSNFLFKSLFPNSPITEFLLTETETDVSIINTLNFKDLNINKSDIITIFMQEGILPKNFLSLEGPQVSMIQLPRLKNE
Ga0181359_10040398F098653N/AMCNTITSVLGFDLDADITDNEGNVIPSGTKCNYIPENKPDYVFNIDYYNKWTNFNTALLDKIRDYQKYNM

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