Basic Information | |
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Taxon OID | 3300019784 Open in IMG/M |
Scaffold ID | Ga0181359_1004039 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4605 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (8.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 43.1881 | Long. (o) | -86.344 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000716 | Metagenome / Metatranscriptome | 923 | Y |
F053753 | Metagenome / Metatranscriptome | 140 | Y |
F098653 | Metagenome / Metatranscriptome | 103 | N |
Protein ID | Family | RBS | Sequence |
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Ga0181359_100403911 | F053753 | N/A | MIMNHQLKFGYSQLGYNILVKLNCKLSSADAVSLEKEYPEICTMQSRNGYRIEGCFNTKKDNFYCYTKLEDFKLSLALKLNDYKINKLIDKNQSLLNQANFELNIANLDEL |
Ga0181359_10040395 | F000716 | AGGGGG | MSLSILFKINIYIMEKLKQDLQKYQTNSKTYIKYDTDGYNQYQNYLYKRALHGLNAMTEKEIATMCSKKKQRIINVYKRAQVVINKLKQQATISYSNFLFKSLFPNSPITEFLLTETETDVSIINTLNFKDLNINKSDIITIFMQEGILPKNFLSLEGPQVSMIQLPRLKNE |
Ga0181359_10040398 | F098653 | N/A | MCNTITSVLGFDLDADITDNEGNVIPSGTKCNYIPENKPDYVFNIDYYNKWTNFNTALLDKIRDYQKYNM |
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