Scaffold Ga0181359_1003759

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1003759
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4714
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012113	Metagenome / Metatranscriptome	283	Y
F023059	Metagenome	211	Y
F035669	Metagenome	171	Y
F041645	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10037592	F041645	GGTGG	MAFSIVGSSLNSSTTAKVLQRQNFSKEPNGLETIIESYAISTANRDTIVPEKNTLHSAFSSSTKKYTRMVVESVTTEEQDGGITQMLVTFVGLTTSTGLPPPIVRLIPTAGEGVYGPPLVIEAEYVTDVSETEFMAGQLAQNTGLGRQALFSTTIKMPAVINGTTMPVDPRTAFFNAPKVGFGGGVYIKYSGYCVLSMSCDRRGLFLIARNTYHEVQQIAISTQGAFS
Ga0181359_10037593	F035669	AGGA	MREQQINELQGTSILTKSFFNKLIRRIECTKPLAGEGITISEKENGFEIASGGAGSVAGYSAITLNVCSNGEPAQIVVLGTPVE
Ga0181359_10037596	F012113	N/A	MEQILTFIQSQDVFAWVGALVALLSAAIAVASLIPGDEPEATLTKIVSFLSKFSKK
Ga0181359_10037597	F023059	AGAAG	MFEAAIASLAGVVGIVFWWLKNRAKTRRERDDDEIAYNRKLRDSEVDSWIHRR