Scaffold Ga0181359_1002837

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1002837
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5152
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (94.12%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F003212	Metagenome / Metatranscriptome	500	Y
F015702	Metagenome	252	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100283710	F015702	AGGAGG	MIREVELEYTIYNLVKLSREVWGDGAVEYLAARLESVITYNQMKALIDSLKEERSE
Ga0181359_100283711	F000821	GGAG	MNKEYLQAKVDLCLNQAEIDLQQQEIARAIKNLERANSALSRIFNLEEDEND
Ga0181359_100283712	F003212	GAGG	MKDKWIVTLEIDTYDGDPAKWDWTDLVGDESKVIESQFKGRVLPTSEGESNE
Ga0181359_10028378	F001477	GGAGG	MTNIYTIHPLKSELILFYEVTTPEGENEWGGASTEGAIKWLRYAPTGSRLLVSAWDSDEEDAHLVGQTLDITEIVRAASL