NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1002328

Scaffold Ga0181359_1002328


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1002328 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)5472
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (47.06%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Associated Families9

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024040Metagenome / Metatranscriptome207Y
F030670Metagenome / Metatranscriptome184Y
F032536Metagenome / Metatranscriptome179Y
F034827Metagenome / Metatranscriptome173Y
F048123Metagenome / Metatranscriptome148Y
F062447Metagenome / Metatranscriptome130N
F078229Metagenome / Metatranscriptome116Y
F104482Metagenome / Metatranscriptome100N
F104483Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_100232812F048123N/AMKPRYDLTKGKLISYDGEIIEFAGSAVVDKYPDQVQEIMDLFDFKKGEYLVTDESSVGDFEKQNMNPKKLQKFKKKYKFSLTNNSNISKIAERMYNFRPF
Ga0181359_100232813F034827N/AMKYTITSQDKESLTEFDQIKEGEVFSFLDPESVQRGNHAIYMKIKVPNTTSVNILDLGDGKAYDFSNKKRNSINDPDEKQGNRVYKLNAKINIVIL
Ga0181359_100232814F078229N/AMSNIKYTYYIEQDKDKDGNLVQGWSIYKTPLVKTIKVKTFKKLKDADTFLDKYESN
Ga0181359_100232815F030670N/AMKVIRYIKQLEDEFGNDLELWGAYEETRKDNYPNVDFIDAKLLKTFPSPYHARNWMENDGKRIN
Ga0181359_10023283F104483GGAGMKKKIIDKIDLVIEDILNLQELIDFDTSDSSEYDLDSVINLLAEISSKVNNEQEEVEKIDLKDL
Ga0181359_10023285F024040AGAAGMTLMKMMKRTILHIDMNFFVTGHNWLAKVTLEKDIKKSDRYTEATTRAIESLLDQEEKEGVNLKVLNYDDYGLGLITLTYDEKDSKKEGEHRVMLTSNILANAGRWDDYKTIKDYEEKCKEEGL
Ga0181359_10023286F062447AGGAGGMKHKIFWEKNSRVKGVVPSAQIINKTSTDKFPCDAVTIRMYNINDKNPTATAYFYGKEAQGSSWNGSNYTYAETKLMVTFDKDKEGYSFNGGAKSFSLQDIKEVLDSVRETLNKL
Ga0181359_10023287F032536GGAMSQKQTFEELMRSFRFHKNPILNWAFAESNYLYHTFLNGKWKVKNILQKLTRGFSDSDCWNLPQSTAKFLLPRIKHLRKNYHSLANRHHLVIDDKIVPYVGKEDNFEFNEKLGSYTDKTTGLGISLDQKEYEYILDEIIFALQTIVDEDNAEISLEELYEVYPKGFDPIKDRQMFLEKQEDGTYLVEFERKENIQPDYSKLNKAYERQRNGLILLGLYFKDLWD
Ga0181359_10023289F104482N/AMKKIKKWKKEVTSEEFEKAMKAQGRLVSKVYYRIRYKDMGLYILNSFKFKLFPKFFYMNGKYFTECGLNWLGWIFEFQWNR

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