Scaffold Ga0181359_1002328

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1002328
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5472
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (47.06%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024040	Metagenome / Metatranscriptome	207	Y
F030670	Metagenome / Metatranscriptome	184	Y
F032536	Metagenome / Metatranscriptome	179	Y
F034827	Metagenome / Metatranscriptome	173	Y
F048123	Metagenome / Metatranscriptome	148	Y
F062447	Metagenome / Metatranscriptome	130	N
F078229	Metagenome / Metatranscriptome	116	Y
F104482	Metagenome / Metatranscriptome	100	N
F104483	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100232812	F048123	N/A	MKPRYDLTKGKLISYDGEIIEFAGSAVVDKYPDQVQEIMDLFDFKKGEYLVTDESSVGDFEKQNMNPKKLQKFKKKYKFSLTNNSNISKIAERMYNFRPF
Ga0181359_100232813	F034827	N/A	MKYTITSQDKESLTEFDQIKEGEVFSFLDPESVQRGNHAIYMKIKVPNTTSVNILDLGDGKAYDFSNKKRNSINDPDEKQGNRVYKLNAKINIVIL
Ga0181359_100232814	F078229	N/A	MSNIKYTYYIEQDKDKDGNLVQGWSIYKTPLVKTIKVKTFKKLKDADTFLDKYESN
Ga0181359_100232815	F030670	N/A	MKVIRYIKQLEDEFGNDLELWGAYEETRKDNYPNVDFIDAKLLKTFPSPYHARNWMENDGKRIN
Ga0181359_10023283	F104483	GGAG	MKKKIIDKIDLVIEDILNLQELIDFDTSDSSEYDLDSVINLLAEISSKVNNEQEEVEKIDLKDL
Ga0181359_10023285	F024040	AGAAG	MTLMKMMKRTILHIDMNFFVTGHNWLAKVTLEKDIKKSDRYTEATTRAIESLLDQEEKEGVNLKVLNYDDYGLGLITLTYDEKDSKKEGEHRVMLTSNILANAGRWDDYKTIKDYEEKCKEEGL
Ga0181359_10023286	F062447	AGGAGG	MKHKIFWEKNSRVKGVVPSAQIINKTSTDKFPCDAVTIRMYNINDKNPTATAYFYGKEAQGSSWNGSNYTYAETKLMVTFDKDKEGYSFNGGAKSFSLQDIKEVLDSVRETLNKL
Ga0181359_10023287	F032536	GGA	MSQKQTFEELMRSFRFHKNPILNWAFAESNYLYHTFLNGKWKVKNILQKLTRGFSDSDCWNLPQSTAKFLLPRIKHLRKNYHSLANRHHLVIDDKIVPYVGKEDNFEFNEKLGSYTDKTTGLGISLDQKEYEYILDEIIFALQTIVDEDNAEISLEELYEVYPKGFDPIKDRQMFLEKQEDGTYLVEFERKENIQPDYSKLNKAYERQRNGLILLGLYFKDLWD
Ga0181359_10023289	F104482	N/A	MKKIKKWKKEVTSEEFEKAMKAQGRLVSKVYYRIRYKDMGLYILNSFKFKLFPKFFYMNGKYFTECGLNWLGWIFEFQWNR