Scaffold Ga0181359_1002175

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1002175
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5608
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011756	Metagenome / Metatranscriptome	287	Y
F027758	Metagenome	193	Y
F029678	Metagenome	187	Y
F034906	Metagenome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100217513	F027758	AGG	MLTDLLFSFIWVFSFFFLAGGIAWLLDRLMSFHLAGMERVRKLQAREREKEREGAR
Ga0181359_10021755	F034906	AGGTGG	MKNTHRLKSAADQAVRQRNYQRARQRAFTRLANTYPDTYRLYIEEEKVADEKMGKKWLDIDGNTSLTDTRTR
Ga0181359_10021757	F011756	GAGG	VSEPRYLEGDEYALTGGYEELVDCKECEKEFDQVEYRSDTCSECEDKQVKRERQKV
Ga0181359_10021758	F029678	AGGAGG	MSRVKGFIIFNQETGQKMATLPLTIPIGSTIEAYQRAGHKVGWGWEEGESE