NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1001954

Scaffold Ga0181359_1001954


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1001954 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)5798
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (38.46%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001459Metagenome / Metatranscriptome690Y
F004760Metagenome / Metatranscriptome424N
F010603Metagenome / Metatranscriptome301Y
F012569Metagenome / Metatranscriptome279N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_100195411F001459N/AMRKLKAALAFIRDQEWVNEPKWEDEDEKAWTGFLSTPTGQKLSLILLNLTLRQNASAVMKKPEELADACGRAKGFRGCVATLESLASQKLNSAIPGYGDGSDETIAD
Ga0181359_10019545F012569N/AMSRALDKFQAQYGFSVGTTGTAPAGYWAIQMLADTTFSAISGKYDGTLTGVTIGSGNIIYGEFDSYTAGTGRVIGYIAG
Ga0181359_10019546F010603AGGAGMSNELFRSPIKAKNKTVRIVSTPFENVIEFTASSSGGTVNTVATAPASLNVTLNGTSYRIALHS
Ga0181359_10019547F004760AGGAMPIYQYEDTRNGKVVELEKAVAERDSVPRYLKRFTVPQRLSLVGVGEPLDNPLGVNQTNLMKGYYRQEQKLGSRFKSNFTPDSIKRETLRRKKYVK

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