Scaffold Ga0181359_1001954

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1001954
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5798
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (38.46%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001459	Metagenome / Metatranscriptome	690	Y
F004760	Metagenome / Metatranscriptome	424	N
F010603	Metagenome / Metatranscriptome	301	Y
F012569	Metagenome / Metatranscriptome	279	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100195411	F001459	N/A	MRKLKAALAFIRDQEWVNEPKWEDEDEKAWTGFLSTPTGQKLSLILLNLTLRQNASAVMKKPEELADACGRAKGFRGCVATLESLASQKLNSAIPGYGDGSDETIAD
Ga0181359_10019545	F012569	N/A	MSRALDKFQAQYGFSVGTTGTAPAGYWAIQMLADTTFSAISGKYDGTLTGVTIGSGNIIYGEFDSYTAGTGRVIGYIAG
Ga0181359_10019546	F010603	AGGAG	MSNELFRSPIKAKNKTVRIVSTPFENVIEFTASSSGGTVNTVATAPASLNVTLNGTSYRIALHS
Ga0181359_10019547	F004760	AGGA	MPIYQYEDTRNGKVVELEKAVAERDSVPRYLKRFTVPQRLSLVGVGEPLDNPLGVNQTNLMKGYYRQEQKLGSRFKSNFTPDSIKRETLRRKKYVK