Basic Information | |
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Taxon OID | 3300019784 Open in IMG/M |
Scaffold ID | Ga0181359_1001328 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6549 |
Total Scaffold Genes | 26 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (61.54%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 43.1881 | Long. (o) | -86.344 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000919 | Metagenome / Metatranscriptome | 834 | Y |
F003331 | Metagenome / Metatranscriptome | 493 | Y |
F004546 | Metagenome / Metatranscriptome | 433 | Y |
F007569 | Metagenome / Metatranscriptome | 348 | Y |
F007919 | Metagenome / Metatranscriptome | 342 | Y |
F010525 | Metagenome / Metatranscriptome | 302 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0181359_10013281 | F010525 | AGG | MYTLQFLAPFVAGLCFENFMTKQGELCNFRQPPDVVLKYDKQDPKDACYKDGIYYPRCKDLENPDILYY |
Ga0181359_100132812 | F003331 | N/A | MTEKDKIFYNVWCCAYRRRYAAKLKQDWELYNREHQTLLMCLKIAKWTTFDTEKPHYLK |
Ga0181359_100132818 | F007919 | GAGG | MTNKLKFTQISRVICPKTGIHYLDAIDENGIHWVAQQEIGVERWITYKETWKRDPQQPLD |
Ga0181359_100132820 | F000919 | AGGAG | MRFRNIEFRWSKVNNKYELVKWYTHDSGDSCYVVAFFNKNTEGYDMETVGDRFFEDKDAWVVGKYGLEFLNEIFEIERIEEDNL |
Ga0181359_10013288 | F004546 | GAG | MDYTEEFPFDQFPWKLVYKDGNETRKCYFQSEDHRKKHIDRYKLKKKDIKLSYKFEE |
Ga0181359_10013289 | F007569 | N/A | MNFTPEQYKLIYTAVRRYQYDKTVLNSKEYNTCSEVLDELFDSVYTQRVEQPT |
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