NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1001328

Scaffold Ga0181359_1001328


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1001328 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)6549
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (61.54%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000919Metagenome / Metatranscriptome834Y
F003331Metagenome / Metatranscriptome493Y
F004546Metagenome / Metatranscriptome433Y
F007569Metagenome / Metatranscriptome348Y
F007919Metagenome / Metatranscriptome342Y
F010525Metagenome / Metatranscriptome302Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10013281F010525AGGMYTLQFLAPFVAGLCFENFMTKQGELCNFRQPPDVVLKYDKQDPKDACYKDGIYYPRCKDLENPDILYY
Ga0181359_100132812F003331N/AMTEKDKIFYNVWCCAYRRRYAAKLKQDWELYNREHQTLLMCLKIAKWTTFDTEKPHYLK
Ga0181359_100132818F007919GAGGMTNKLKFTQISRVICPKTGIHYLDAIDENGIHWVAQQEIGVERWITYKETWKRDPQQPLD
Ga0181359_100132820F000919AGGAGMRFRNIEFRWSKVNNKYELVKWYTHDSGDSCYVVAFFNKNTEGYDMETVGDRFFEDKDAWVVGKYGLEFLNEIFEIERIEEDNL
Ga0181359_10013288F004546GAGMDYTEEFPFDQFPWKLVYKDGNETRKCYFQSEDHRKKHIDRYKLKKKDIKLSYKFEE
Ga0181359_10013289F007569N/AMNFTPEQYKLIYTAVRRYQYDKTVLNSKEYNTCSEVLDELFDSVYTQRVEQPT
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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