Basic Information | |
---|---|
Taxon OID | 3300019784 Open in IMG/M |
Scaffold ID | Ga0181359_1001205 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 6742 |
Total Scaffold Genes | 18 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (55.56%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
Associated Families | 6 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 43.1881 | Long. (o) | -86.344 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003661 | Metagenome / Metatranscriptome | 474 | Y |
F011666 | Metagenome | 288 | Y |
F033013 | Metagenome / Metatranscriptome | 178 | Y |
F038240 | Metagenome / Metatranscriptome | 166 | Y |
F056612 | Metagenome / Metatranscriptome | 137 | N |
F091645 | Metagenome / Metatranscriptome | 107 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0181359_100120510 | F011666 | N/A | MEWHPIERTQESQFSEVATAKMLEEWLKQGDIKGIYNAALLLNTMLHQQRTITKWLAGEAARNLGRPDLEDDILQKSIIQSG |
Ga0181359_100120515 | F003661 | AGCAG | MDPTTAAAIAIVIAAGSEIIALLPIKENSWVQLIVKALKIIFPKR |
Ga0181359_10012052 | F033013 | N/A | MAIQLTAKASTLKTVMLQIEPDLYARIKAAAKQHNLPAAVAMRQILEQGIEEVEANA |
Ga0181359_10012054 | F038240 | AGGA | MRVQVLLDPEALQLMEREVALRYNSASRVTVSSLANEIIKSHYAILESQDEQL |
Ga0181359_10012055 | F056612 | GAG | MSNFESAFDAKFSLFQVKQKKSDKAPDKTGTIELELSEAMKLAEYLTAHPGEEGYGGKTVIKLAISAWDRCSTTGTEYTSGTVWAKKPEAGVNDVPVF |
Ga0181359_10012056 | F091645 | N/A | MDFTALFPEHVEPNCGPGISYCVAPNARMFDYELVMPGERRLRGCLRAINKKDAERILQNRHPSATKIDIGEGRKIISAPPKT |
⦗Top⦘ |