NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1000785

Scaffold Ga0181359_1000785


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1000785 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)7645
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012113Metagenome / Metatranscriptome283Y
F023059Metagenome211Y
F025225Metagenome202Y
F049401Metagenome146N
F086801Metagenome110N
F093768Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10007851F025225N/AMLSIDLLNHDKFVVKLQQYKDASRKNMAKVINDKLGDVAVTAIGTTYRSNSAKIASELERIVSSVKNKAIYKPVGISKNGKIIKRKIGVKKKFSSRNESYAGTYKLVNWLLKNRNLPTLGKTKQGVGGLGMGDTAGTIGALARRLVAGRKRSVNYIRNGWAAAAAVFGKRAKLTRGDYSKEAIKRLGGGTKAESDKARMEGMIFNRAGDLDTRYYPVRKRAISGAVAVGKPGLEEAVEIVMADMAVYLARKNKEASDKIRL
Ga0181359_100078511F086801AGTAGMTGIKVVASNEFTEKHAYHLSQIQLATIEAIEIKYRKGQAQHGEAGPLWTMPTIRVTENAIEESIDQVTYLMTLRGQVKIIYELARLGMEDEDLCATTARDSCKKIFEMMGGIK
Ga0181359_10007854F093768N/AMALLPQTVSRPLRKLNPTPSGVGIGVEYINDIIGRIEQLVQVAQLQKPIAGNNITINYTAEGAVINAVTE
Ga0181359_10007857F012113N/AMETILTFIQSQDVFAWVGALVALLSAVIAVASLIPGDEPEATLTKIVLFLSKFSKK
Ga0181359_10007858F023059AGAAGMIEAGIASLAGVVGILFWWLKNRAKTRTERDDAEIEYRRRVRDADLDNWWRHRP
Ga0181359_10007859F049401AGGVTLTLIIGGGIVLSSCASTNYTYTAPSPADIPELIMEWDKLERSLGLVKPEFREQYAKALKALSNAIAEQERWRARAENK

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