NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1000609

Scaffold Ga0181359_1000609


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1000609 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)8280
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (37.93%)
Novel Protein Genes12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Associated Families12

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016774Metagenome / Metatranscriptome244Y
F026210Metagenome / Metatranscriptome198Y
F027756Metagenome / Metatranscriptome193N
F032548Metagenome / Metatranscriptome179Y
F044916Metagenome / Metatranscriptome153Y
F048101Metagenome / Metatranscriptome148N
F048121Metagenome / Metatranscriptome148N
F062446Metagenome / Metatranscriptome130Y
F064403Metagenome / Metatranscriptome128N
F066486Metagenome / Metatranscriptome126Y
F071966Metagenome121Y
F082109Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10006091F071966N/AMSLLGSHIDIQGYILKPFYLLLGALYFIVLLSLLGALYIVLLCKSTLEKVVKDIKKERNKYKRVK
Ga0181359_100060910F082109N/AMWTPIEIFILSFLLNHSPMKSERLSVKEVIENREARLLVESVGLRNDF
Ga0181359_100060911F048121N/AMNTTNTQYTWQVKATTGQLVVAPKSYPTLRGAKIASKRFANKTGGAVVSVSVK
Ga0181359_100060914F016774GAGGMPPKKPKIEFLSEHLASLNHWRDQLLALEKSYHSKDPEKERTCRNMINKYLDDVLNYNKNIKEKPKNKV
Ga0181359_10006092F026210GGAGMSPILGANPLDYDAKYPQVAESTNDDAKIFVMERNEGREVMFQIEDGTQYYGRIGYVPNSEHYCVVIDNNGTPWEWYVREEALRFVEDISTKIG
Ga0181359_100060922F044916N/AMGRKKVDKSRIEKGLEKEEKTFALMAKKIVDAIKDEKELRVFAKTSLEILYKDNPNLFADHAKLKLKKK
Ga0181359_100060923F064403GGAMINPRAKILSDLKKAYLKEHPVSLVDRILGYLNNLTDFQLCQLYSEKYETNPKYMAEQFEFKF
Ga0181359_100060925F032548N/AMKHNQEMEKAIKILEELVIQADEDCPHDCRTMHFVNALEQASEFIMEHKNAK
Ga0181359_100060926F027756GGAGMKLKDLIDRKILYINFPMNRHAIQEGKITEISPAEKCIKINNDWHLRDNIRIIELFSEKERPALGFN
Ga0181359_10006094F066486N/AMKNKTISKNDPYHLKVGKFKKKNVFDTQVDMGDRMRDFFLGLGRRVITEDEFINIGFNYALIKGLGEAKKVKSKKK
Ga0181359_10006096F048101AGGAGMTKKMKMKKFKNIKEFLKTCSPDEQEYIYDLYNNASIADLIDLLFEHLPADDTIQEIQEYREEMEWDDNEAEKSNKGKRKCDCDFVGCQGC
Ga0181359_10006099F062446AGGMIFNPVRMIAFILIVIAWILMTFFFVGCANTSYHTIPTAMSEDAQDYPTKYNMMDSPDGRRNPNAQVNIFGATY

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