Basic Information | |
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Taxon OID | 3300019784 Open in IMG/M |
Scaffold ID | Ga0181359_1000609 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8280 |
Total Scaffold Genes | 29 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (37.93%) |
Novel Protein Genes | 12 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (50.00%) |
Associated Families | 12 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 43.1881 | Long. (o) | -86.344 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F016774 | Metagenome / Metatranscriptome | 244 | Y |
F026210 | Metagenome / Metatranscriptome | 198 | Y |
F027756 | Metagenome / Metatranscriptome | 193 | N |
F032548 | Metagenome / Metatranscriptome | 179 | Y |
F044916 | Metagenome / Metatranscriptome | 153 | Y |
F048101 | Metagenome / Metatranscriptome | 148 | N |
F048121 | Metagenome / Metatranscriptome | 148 | N |
F062446 | Metagenome / Metatranscriptome | 130 | Y |
F064403 | Metagenome / Metatranscriptome | 128 | N |
F066486 | Metagenome / Metatranscriptome | 126 | Y |
F071966 | Metagenome | 121 | Y |
F082109 | Metagenome / Metatranscriptome | 113 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0181359_10006091 | F071966 | N/A | MSLLGSHIDIQGYILKPFYLLLGALYFIVLLSLLGALYIVLLCKSTLEKVVKDIKKERNKYKRVK |
Ga0181359_100060910 | F082109 | N/A | MWTPIEIFILSFLLNHSPMKSERLSVKEVIENREARLLVESVGLRNDF |
Ga0181359_100060911 | F048121 | N/A | MNTTNTQYTWQVKATTGQLVVAPKSYPTLRGAKIASKRFANKTGGAVVSVSVK |
Ga0181359_100060914 | F016774 | GAGG | MPPKKPKIEFLSEHLASLNHWRDQLLALEKSYHSKDPEKERTCRNMINKYLDDVLNYNKNIKEKPKNKV |
Ga0181359_10006092 | F026210 | GGAG | MSPILGANPLDYDAKYPQVAESTNDDAKIFVMERNEGREVMFQIEDGTQYYGRIGYVPNSEHYCVVIDNNGTPWEWYVREEALRFVEDISTKIG |
Ga0181359_100060922 | F044916 | N/A | MGRKKVDKSRIEKGLEKEEKTFALMAKKIVDAIKDEKELRVFAKTSLEILYKDNPNLFADHAKLKLKKK |
Ga0181359_100060923 | F064403 | GGA | MINPRAKILSDLKKAYLKEHPVSLVDRILGYLNNLTDFQLCQLYSEKYETNPKYMAEQFEFKF |
Ga0181359_100060925 | F032548 | N/A | MKHNQEMEKAIKILEELVIQADEDCPHDCRTMHFVNALEQASEFIMEHKNAK |
Ga0181359_100060926 | F027756 | GGAG | MKLKDLIDRKILYINFPMNRHAIQEGKITEISPAEKCIKINNDWHLRDNIRIIELFSEKERPALGFN |
Ga0181359_10006094 | F066486 | N/A | MKNKTISKNDPYHLKVGKFKKKNVFDTQVDMGDRMRDFFLGLGRRVITEDEFINIGFNYALIKGLGEAKKVKSKKK |
Ga0181359_10006096 | F048101 | AGGAG | MTKKMKMKKFKNIKEFLKTCSPDEQEYIYDLYNNASIADLIDLLFEHLPADDTIQEIQEYREEMEWDDNEAEKSNKGKRKCDCDFVGCQGC |
Ga0181359_10006099 | F062446 | AGG | MIFNPVRMIAFILIVIAWILMTFFFVGCANTSYHTIPTAMSEDAQDYPTKYNMMDSPDGRRNPNAQVNIFGATY |
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