Scaffold Ga0181359_1000297

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1000297
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 10641
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (16.67%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025648	Metagenome / Metatranscriptome	200	N
F032560	Metagenome / Metatranscriptome	179	Y
F051915	Metagenome / Metatranscriptome	143	Y
F054663	Metagenome	139	N
F054853	Metagenome	139	N
F086624	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100029711	F025648	N/A	LPSGLIDKEDLPIIEAFKGDKLNLISPVTLRENLAYIFTLIGLTRLPDKIELEVIEDFIRSTYPFFTIQEMRIAFKMAVQGKFDCNIEHYEKFSPKYISGIMNAYKSKANQVRKNIPPPPEQPVKQLTEQEIVDFTKQDWINGKRQDFNRVFNADKVFKILLKQGKLTFTKDQILETINLVREDNIYRLNKMHPLDAKKFSQEIRSEDFIELQCKKLALVKYFESLSN
Ga0181359_100029714	F086624	N/A	MSEVKKESIGAWKNTTKDGKEVIKFSINGQRYNMWVNSYKDKPAQPDYKIYEDTYVAPTETKLANDDLEF
Ga0181359_100029715	F032560	N/A	MQENYQDLERGMQRLLPMERQMILAKIYHYAWYNNKAYDQLITFVSHWEKHSEFKAVFFNQDSDESINQI
Ga0181359_100029719	F054853	N/A	MSEEKQEVSEEIEWEDAETTTRSDLISCAYYAISAVEDIDLTLVSKMEANRIKTIRRQSLDIIANVIGEMHAEIFDIEEDI
Ga0181359_100029724	F051915	N/A	MMKFFNTIYGSWVKVFISAVLTMIIAKGNIYLITLEECISAGVISILPIIVNYLNPNDNRYGKQK
Ga0181359_10002977	F054663	N/A	MEIKQEHREWLTANINNYECAKNGYIRNLELDVLKMYEHIYRTYLDPNYIVSVWCGACKFEMVMRLYQWFEKQ