Scaffold Ga0181359_1000006

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1000006
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 49804
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (84.13%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008303	Metagenome / Metatranscriptome	335	Y
F022157	Metagenome	215	Y
F031360	Metagenome	182	Y
F095383	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100000630	F008303	AGGAG	LIDKIILSAVLGTVGFNGLFPEPPAPPTPWQLQVKAKEASKSAVCDKKKKQSKTVKQLCKRWGKHND
Ga0181359_100000633	F022157	GGAGG	MWDVAVTFMLMMFGAFTVIAFGAILIWALYVFQKGVDDE
Ga0181359_100000649	F095383	AGGA	MKNPLDQYRSGLFGSRGVDVGAALEYVDQLASASSDPVAVQTAARVLLNTVIGAVDQILGSRSPEKLALIELIDERIAASASNIDQQISDWMDSNVDHDNLISEWMSDNFDVNDYNVDDVVDDKIGEWISNNLADEVESVIKNSLTFNVIVN
Ga0181359_10000066	F031360	GGA	MDNIKLSTNLVNAILQYLGTRPYTEVFQVIEAIQKEAKAASEPPAE