Scaffold Ga0181361_106271

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181361_106271

Scaffold Ga0181361_106271

Overview

Basic Information
Taxon OID	3300019783 Open in IMG/M
Scaffold ID	Ga0181361_106271 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Sp13.ND.MM110.S.N
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	911
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019944	Metagenome	226	Y
F034044	Metagenome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181361_1062712	F034044	AGGAG	MTKDDIILMADASGLSFYGMGKDRDKFIYYLEAFANLVAAAEREACAKIAEMAEPYKCADLIRARGQS
Ga0181361_1062713	F019944	AGGAG	MNSEEDEFKRIEAEAKRREAVFKEMMYWMGTNMDEDDDTQVYIKPWVGLTWEDMPEEHAGDSSFLSGARWAEARLKERNHD

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