Scaffold Ga0194024_1030019

Overview

Basic Information

• Taxon OID: 3300019765
• Scaffold ID: Ga0194024_1030019
• Source Dataset Name: Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW13Sep16_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1180
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: USA: Delaware
• Coordinates
  • Lat. (^o): 38.7906
  • Long. (^o): -75.1638
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003976	Metagenome / Metatranscriptome	459	Y
F054417	Metagenome	140	Y
F059441	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194024_10300191	F003976	GGAGG	MSRLYNDYYFEKQDILDTLDKLEMSVRFLNVWVSEPMGLENAKYVLEKNSNRTYDLLDINMVKELVEEEVRXVMV
Ga0194024_10300192	F059441	GGAGG	MKTWSSTITYSVFDMGRECETEEEYREWVKETFILDHDIYLRDDEITNIEREELYNE
Ga0194024_10300195	F054417	N/A	KFNKQKTIDKIVDDFNECRISSEWFPHSETQIEWSTHQDVYLILYQDKTWDYAEPKHLDMYVEDLEVQDLKEYSRR