NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194023_1015229

Scaffold Ga0194023_1015229


Overview

Basic Information
Taxon OID3300019756 Open in IMG/M
Scaffold IDGa0194023_1015229 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW6Sep16_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1553
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080023Metagenome / Metatranscriptome115Y
F082546Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0194023_10152293F082546GGAGGMKIESKAIISRRIRNIEKDIESCRNSGNTFRMRILYAQLSQARIKLVAMKR
Ga0194023_10152294F080023GGAGGMTTTFTIQITPIKAPFMRCRQDAVPTVTKARVNGKVEYHEFRWNNPKAGRNIMFKDTPDTIAEREQYKENFAHRVQRAFDKANVRFFAHYKDINFEDEIVRVYAPYPNIAPNATITVYSQRVHQYNAHRDFLRDIVSKMNNQYNTLMCVLQQGKYDLAKDSLYKL
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