Scaffold Ga0194000_1003433

Overview

Basic Information

• Taxon OID: 3300019750
• Scaffold ID: Ga0194000_1003433
• Source Dataset Name: Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - FLT_6-7_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1573
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: USA: Delaware
• Coordinates
  • Lat. (^o): 38.7906
  • Long. (^o): -75.1638
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002942	Metagenome	518	Y
F004131	Metagenome	451	Y
F038218	Metagenome	166	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194000_10034331	F002942	AGGAG	MTEEQFTAFLVLLAAVSVPSVSLLFAGAWELWWYST
Ga0194000_10034333	F004131	AGCAGG	MRAKRTTVVADVSQFPFSVMRRQLITPLVREAAELLWPAERRRVTVLLRAPEFWDECEKADLEASEELADICFDLWVGAMT
Ga0194000_10034335	F038218	AGG	MNNELLNAIQNMLINFANENAISLADEFGTREKFAQFVFSFTIKSLVDICGLDTKTAYDFVMGDGAFTKLADDCWQQLNAVAA