Scaffold Ga0194020_1060602

Overview

Basic Information

• Taxon OID: 3300019741
• Scaffold ID: Ga0194020_1060602
• Source Dataset Name: Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRC_6-7_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 539
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: USA: Delaware
• Coordinates
  • Lat. (^o): 38.7906
  • Long. (^o): -75.1638
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002164	Metagenome / Metatranscriptome	588	Y
F040719	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194020_10606022	F040719	N/A	MTQKLKPIFDSFQEYIEAEDMIFKTLQGDMTVTIGSKDIE
Ga0194020_10606023	F002164	N/A	MKKRRCLSHKRYVSHRMQELQNELFQEAMDTGLVNLEKRKQLLKYKNHLKHI