NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194001_1042758

Scaffold Ga0194001_1042758


Overview

Basic Information
Taxon OID3300019730 Open in IMG/M
Scaffold IDGa0194001_1042758 Open in IMG/M
Source Dataset NameSediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLT_7-8_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)591
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016899Metagenome / Metatranscriptome244N
F097268Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0194001_10427582F016899AGGAMVTEKVIMFKKYMLEGTLDPEIQAVFKAAADISNGVFSLQEAANHYKVHPSVIVQFIAESTEYDMIFSKFTEEKQ
Ga0194001_10427583F097268AGGAGMGRNWNGSCEDWLHGDEPYGFDLPDADDYPPMEQWEIDEAKAEILADIENDNERIEEKDNDV

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