Scaffold Ga0194001_1002358

Overview

Basic Information

• Taxon OID: 3300019730
• Scaffold ID: Ga0194001_1002358
• Source Dataset Name: Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLT_7-8_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1540
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: USA: Delaware
• Coordinates
  • Lat. (^o): 38.7906
  • Long. (^o): -75.1638
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014505	Metagenome / Metatranscriptome	262	Y
F078504	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194001_10023581	F078504	N/A	MSLSNYLKNSRNLSDARTAISVNVGKSGEALFKELTGAIKSELADDKQHIDFYWGEKKVDVKGLKKMHHSG
Ga0194001_10023582	F014505	GGA	MDRIENFYRKNFKRLTGFIKQYTDGSYDIASDIVQMVFLRLLELEQEGRTNFYEGNSLSFFYVYRSCINTALKYQRTKKRIQKVDIDDLENHSYETYPEEREAMEKLIDMMEQELDDMHWYDSKMIRIHMEGNSMNKIHRETNIGLTSIKNTIKNGKAKIYDKIQEDYQDYENGDYDKI