NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193993_1041871

Scaffold Ga0193993_1041871


Overview

Basic Information
Taxon OID3300019711 Open in IMG/M
Scaffold IDGa0193993_1041871 Open in IMG/M
Source Dataset NameSediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BLC_4-5_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)575
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000200Metagenome / Metatranscriptome1633Y
F003225Metagenome / Metatranscriptome499Y

Sequences

Protein IDFamilyRBSSequence
Ga0193993_10418711F003225N/AKPELETYFNNYNELFNSEGFKQLIQELSNNAVTLADIQTVKDTEDFLFRKGQVAALASVINLQATIEAARDQAEEEEEVDD
Ga0193993_10418712F000200AGAAGMIKVYDFRCDNGHVYEQFVDSGTEVGRCKCGASATKMLSAPAFILDGHTGDFPGRHMKWVKEHEQAGRSNSSP

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