Scaffold Ga0181562_10064258

Overview

Basic Information

• Taxon OID: 3300019459
• Scaffold ID: Ga0181562_10064258
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011511BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2188
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050661	Metagenome	145	N
F071140	Metagenome	122	N
F086188	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181562_100642581	F086188	GGAG	MGRLNDLLIDADIAAEEVLHEGCQEFQEFCEGMKKMRKLSDNWLLEHPPHLEQVWQEHTQNQRYEHG
Ga0181562_100642582	F071140	GGAG	MNISLRKESEMDHNDSLAFDLTVKMLRNYAKDCLVDKDMEMMDPMAGSYLLVHNLVVGLLLKADGFEKELINICYSAIEDAEFRLNKSRERLNG
Ga0181562_100642584	F050661	GAG	MSNKIRFYAFSSDGDPFGVRFIPYDATNFELKALTSNFDAKALFAKMRANCEGHVPVYNPDKTYTENLQDLQARLGYWPVPLSHQYVYEDIPIEYDDDWTEETSKPNYKHRWQLEDRKEYYFPPKDDEPPF