Scaffold Ga0187892_10022135

Overview

Basic Information

• Taxon OID: 3300019458
• Scaffold ID: Ga0187892_10022135
• Source Dataset Name: Bio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5928
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: USA: the Island of Hawaii
• Coordinates
  • Lat. (^o): 19.0643
  • Long. (^o): -155.8008

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035236	Metagenome	172	Y
F045207	Metagenome / Metatranscriptome	153	Y
F059117	Metagenome	134	Y
F066913	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187892_100221352	F035236	N/A	MNLLLGLPFIAVVWGLLLPLLFLDGAVAYLTFLWENPRLVAAVVVNLGVVSYWLARRLSQALLLRSTGAKLRATHEPP
Ga0187892_100221354	F059117	GGAG	MSASDSRFVAIWASHEARARVWFRLFLFTAAALVLSLFTTLRVWSRPREVVRIGCDGIPQVVTLDNAAYSEPNEREIRAFATEFSVFYARSDSYSILNDLVWCANRMAPELRDRFKRSVRGTPEARGIITVIEKLQRRTQIDPATLEIQVDKRPYPWKVKVKGVRQVVGDSGPGETFELDLELVRASREEHLEGLLVWAIRAKGEPIDTVLAAIGTQGGRIP
Ga0187892_100221357	F045207	GAGG	MRTRLAVIIALALLSAGCTADVLGRMKGFDVKQIIQSAPVVEAVLKAKNIGRVLAGIEALILAFVSWYRIHAGGHWLSITKDWFFGILVCAFILTSAGTSAGFEQWIWRVGVYLGEQFNPTDGFLMENFNKAVGSHSGLFLLIQNVAPTLTTDDQRAVEAVTWIFSSPYVSGIVGLNAIGIYIMKMVMQVSYAWLISFYWMLTPLVAPMVILPQTRSVFLGWLKTYVSVALWPMFFAFAERLALAIPWSAWIGAADGAGDGWAVITSILQGEIMLLIFNVTFFFVYLSIPIASYLIVSGASRPFRML
Ga0187892_100221359	F066913	N/A	GLVVAVLLLGSSGASADPSNWAQLGQIILWLQRIDQTLRDINDIVDTVKEKLLIVYPNGALRQIETFFEPVDSIKREVEKLACSWKFTPRVNRLRLALFGGGSFCRSDWNVVFGPPVATVDWDLESYYDWSAVRRLNLIKTRNEKSALRADEAHWLATEALKGRADLDPTKPYSPGYSQRLSALGAAELGNVMVEMGDTQTAMLELDQEALNDKRRRRLLDHSAATLVYAGLTTLQGSAPDPGLLLFGDRP