Scaffold Ga0190264_10366553

Overview

Basic Information

• Taxon OID: 3300019377
• Scaffold ID: Ga0190264_10366553
• Source Dataset Name: Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 914
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 38.0262
  • Long. (^o): -109.5407

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016321	Metagenome / Metatranscriptome	248	Y
F093266	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190264_103665531	F093266	AGG	LMENLAVSVMQANNLAAASPEYGALAEAVAYALDLAELGVSVESGAFDLSNTPRLG
Ga0190264_103665532	F016321	AGGGGG	VSEAESRRAGARKRTARWIESLWEGTNTTSREEDQKEEVLAVFRELAMESRSKGEVREYVPWQPLW