Scaffold Ga0173482_10183667

Overview

Basic Information

• Taxon OID: 3300019361
• Scaffold ID: Ga0173482_10183667
• Source Dataset Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 843
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F001935	Metagenome / Metatranscriptome	615	Y
F065748	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0173482_101836671	F001935	GAG	MWVKHLSSLQFLTYVAFFAVVIAAICKFVPGRAPLVRHEPYPDDELHAHDAKTAKYFIAGSFFLVLGSLHMVLKNLPWVAEYLARTGYAGHLVRDLSNTHVMIVGGGTLLATGLCWLALPRIVRRP
Ga0173482_101836672	F000280	AGAAGG	MADRTPEETGPARPLVGYRDTGAEPQRFTREASIRAWVILAILVVLYLGWTLIVYFLEPGLR
Ga0173482_101836673	F065748	N/A	IPEADWPLVYSSLQALKGHTQEYPGCQKLEAFIALESGDLRITAYSTWDTPEQLEAFLERGYTLQRMLMDTAGIAVESSRVVEKVF