NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0173482_10160897

Scaffold Ga0173482_10160897


Overview

Basic Information
Taxon OID3300019361 Open in IMG/M
Scaffold IDGa0173482_10160897 Open in IMG/M
Source Dataset NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)884
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008500Metagenome / Metatranscriptome332Y
F092336Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0173482_101608971F008500N/ASVSCSNCHSGGLIPVVDEVRDIAIANARDIGLDRDEVEQLEGIYVSPQEFARQVQEDSEGFYQRALQQADLPIQGGDPVSSVFLRFDQDVRIEDAAGDLGLTPDELADNLQLLNPVLEVLDKGSIDRDDFTALYVDSLCLLSTNLENQPLAAVCDAAAAAAQ
Ga0173482_101608972F092336AGAAGMDSFQNLGTPNRSRFGVFKLSKPKRLKARHGLPDSVSQGAFVYRALSELDADGAWGTWLGEQRDTAGNTQPVLLKHTGENNRTRAGA

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.