 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300019361 Open in IMG/M |
| Scaffold ID | Ga0173482_10000091 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12759 |
| Total Scaffold Genes | 24 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (79.17%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.3 | Long. (o) | -89.38 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000466 | Metagenome / Metatranscriptome | 1105 | Y |
| F068533 | Metagenome | 124 | N |
| F092011 | Metagenome / Metatranscriptome | 107 | Y |
| F095448 | Metagenome / Metatranscriptome | 105 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0173482_1000009114 | F095448 | GGAG | MMASTLTHQPDPAIPNIVCPKCGLRMQVAAIEPAGDNDRTVTFGCDCGHRYDLSERAIVALARDSSDRW |
| Ga0173482_100000914 | F068533 | GGAG | VRNIARWTAPAAIALFLASVQFARSDQGLTGDVRTTFIEAATRSCLKTQLDAPTNKDVPVSALYDYCKCNASGMADKTSNDEVKTLEATGSEEKYRTAMQTRMESSAKTCLDEIRKSLPK |
| Ga0173482_100000917 | F000466 | GGAGG | MTRVLTYMENWKSWKTAPSQGVVKRDWVPTGRIDFATRLNGTLEESDQPSEFKLLVEERRIVESITGNENLEIQWRLATLNEAKAVVAQYHKYLAENALIRSVSDETVSLPPPKKVQKIQETTAA |
| Ga0173482_100000918 | F092011 | N/A | MDASDAVFHIAVLVIGVLGILLSLAGIAFWWASRKMNRLT |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |