Scaffold Ga0187840_10001990

Overview

Basic Information

• Taxon OID: 3300019289
• Scaffold ID: Ga0187840_10001990
• Source Dataset Name: Extremophilic microbial mat communities from Yellowstone National Park, Wyoming, USA - OCT_B_HostDNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2783
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Microbial Mat → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.534
  • Long. (^o): -110.7978

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038745	Metagenome / Metatranscriptome	165	Y
F051572	Metagenome / Metatranscriptome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187840_100019902	F051572	AGGCGG	VERSASRGFWLAMSSGRAHGPFAEVWAFADVVLEGGCKKSVQLLNTRLELCVLAALIKTAPAGSMVKLRPEIVRRLVEELAAAAGRDRERVRNALLKKAGEVLAQLRRELGDKTPAEALLAKLAELFLKEL
Ga0187840_100019903	F038745	N/A	MGGPPCDFAEAVERLIRRAASARGAEELLEALNGRVRLEELGMPAPALEALAEELGPEPRWLDALAASFFRLYLGLHRQRRVDGRDLALALCLWVQKRRLEDPRNPLWRAAELEPDRLYTEEEARRALKIEERLFQRLWRRALMFHRNEKAYGFQLTLAALSLMAAPPRSV