NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187797_1301081

Scaffold Ga0187797_1301081


Overview

Basic Information
Taxon OID3300019284 Open in IMG/M
Scaffold IDGa0187797_1301081 Open in IMG/M
Source Dataset NameMetatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)974
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.2396Long. (o)-73.2024Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018334Metagenome / Metatranscriptome235Y

Sequences

Protein IDFamilyRBSSequence
Ga0187797_13010812F018334GAGGVQLVALKVPVLLLVKVTVPVGVTAPVPEESATVAVHVVATPELTDAGLHETVVLLDRIVDASVKVPLLPAWILSWNAAYVAVINA
Ga0187797_13010814F018334GGAGGVQDVALKVPVLLLVKVTVPVGVTAPVPEESATVAVHVLGVLSKTLVGEHATLVVLARMVDANVKVPLLPV
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