Scaffold Ga0182075_1116896

Overview

Basic Information

• Taxon OID: 3300019282
• Scaffold ID: Ga0182075_1116896
• Source Dataset Name: Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071407BT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 813
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012779	Metagenome / Metatranscriptome	277	Y
F054895	Metagenome / Metatranscriptome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182075_11168961	F054895	AGGAG	MAAISLTNNTIYAQNINNFTGELFKVGGQRTPLLSSVGGLNGGKVLNSTYWQV
Ga0182075_11168962	F012779	GGA	MTEEFNNSDTGDKNWKEMREKLSFYEDKIAQYESKERQEVFNKAGLDTTKGIGKAVEMMYEGDLTVEGIQGYASQEFGVEFGNQDRLQNNVEQSQERLNNIQKNSVVDLYNTDVVSQVREVEKNGTVRQSLAAKLSVLDEAKKNSK