NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187800_1554335

Scaffold Ga0187800_1554335


Overview

Basic Information
Taxon OID3300019278 Open in IMG/M
Scaffold IDGa0187800_1554335 Open in IMG/M
Source Dataset NameMetatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1233
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.2396Long. (o)-73.2024Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015425Metagenome / Metatranscriptome254Y
F034447Metagenome / Metatranscriptome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0187800_15543351F034447AGAAGGMIRQLCLLLGAAALTASAGCIANHKYGCDFTTLVAPGSAEGRVFHDHGCPDQVIELGNPVDANTHHWNRYLVVYRIGEGHMLLGNIKQDDRFQNLCYLIENGHVVQGGFAEEGSGGSILMPLADAMHPKARVGYGGDWGFPGEYGIEGRLGVHTGDGGASLTVNVNH
Ga0187800_15543352F015425AGGAGGMRNAIKLSLLLAAFMTAGGCISTTKYGTVATETVGDNAGEGDVIMKHGAPDCIMYLGTQYFNPTTGARGSIDKYLYEYRIGGGTTLLGHTYATDSFQNICYLIEGGKVKGGATIVPEGSGAIILNGTFLHPKMRAGYGGDGTPNGLPLNLPKPPGLLGLGIGPF
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