Scaffold Ga0184648_1317040

Overview

Basic Information

• Taxon OID: 3300019249
• Scaffold ID: Ga0184648_1317040
• Source Dataset Name: Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 817
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030367	Metagenome / Metatranscriptome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0184648_13170401	F030367	GGA	MTTKTLQALLIGVLLASSAAFAEQSIEVSVVNGKQQAAFSVGDSKCVLVNDVIQCTPVVLASN
Ga0184648_13170403	F030367	N/A	LTKRTQTMTTKTLQALLIGVLLASSAAFAEQSIEVSVVNGKQQAAFSVGDSKCVLVNDVIQCTPVVLASN