Basic Information | |
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Taxon OID | 3300019244 Open in IMG/M |
Scaffold ID | Ga0180111_1199214 Open in IMG/M |
Source Dataset Name | Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT293_16_1Ra (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 754 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: East River, Colorado | |||||||
Coordinates | Lat. (o) | 38.9228 | Long. (o) | -106.9508 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F010621 | Metagenome / Metatranscriptome | 301 | Y |
F017072 | Metagenome / Metatranscriptome | 243 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0180111_11992141 | F010621 | AGG | LTWFAGRCCNHQPKRAEKPHSKSANRKVPDGPATRPVTPLAVENGVGKPAAPEKGAPNAGTGKRAW |
Ga0180111_11992142 | F017072 | GGAG | LARQNSPVPLAVFAHRQMRMRNLAASSDEKPLRVESSNPGRFRAWMNRSHPEGEQLLLCISTVRPALADQDKTETAQRKTPKGGQTERTHREDHGNLAGSVKNFRAPAMLKTTPLDCEIKCNLREERRDPWPRANAPSQAVADPEPVVKTRTTFAGVS |
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