Basic Information | |
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Taxon OID | 3300019218 Open in IMG/M |
Scaffold ID | Ga0179954_1094809 Open in IMG/M |
Source Dataset Name | Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan ? AD_JPNMR3_MetaT (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7126 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Japan: Gunma Prefecture | |||||||
Coordinates | Lat. (o) | 36.29 | Long. (o) | 139.38 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F070167 | Metagenome / Metatranscriptome | 123 | N |
Protein ID | Family | RBS | Sequence |
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Ga0179954_10948095 | F070167 | AGAAGG | MSLLGNALFGPKSLSGYNQTPDQLTQAYTPQTYSVDTSRYNALGEEFLNPYSSRNRGMYNDLKKMGVDAAAQQYLNSMRMQAAGQNPFATGQLQSLLASNLEGTRQAYNSYLNNAYQTGTGLLGYGLQGSMANAAAQNAAAMQGSQAALNYGLQKMQADATMQAMRAQNKTSFWGGLLANAIGATPAAIFGLRQL |
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