Scaffold Ga0179946_1274315

Overview

Basic Information

• Taxon OID: 3300019217
• Scaffold ID: Ga0179946_1274315
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan ? AD_JPNNA4_MetaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1394
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Japan: Niigata Prefecture
• Coordinates
  • Lat. (^o): 37.43
  • Long. (^o): 138.83
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034230	Metagenome / Metatranscriptome	175	Y
F045836	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0179946_12743151	F034230	N/A	MRRWMILAMLSGFILSGTAAPAQGDASGPETNKLRVTVGPFFTQESDKKIPLESAASRVIRKGKRVNITVTVENYGKEKSEPVRLRYMETDGKAAEPRLYRVESIEPGKKWQRTFMARWETSGRKSVTATLVTPEDKPLVDATGKPRPDTSHTGSVSLTVKRM
Ga0179946_12743153	F045836	AGGAGG	MESPNLVTALAYYTVSAFLDPIQWLICGICGWSAERLDQAVIAAAGLVAVLFVVLTWFYPDGKLFSFPTPHAGFAILGKAIGAMLMTGLIHWLKKRQLSRKTGT