Scaffold Ga0179946_1269168

Overview

Basic Information

• Taxon OID: 3300019217
• Scaffold ID: Ga0179946_1269168
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan ? AD_JPNNA4_MetaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1730
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin088 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Japan: Niigata Prefecture
• Coordinates
  • Lat. (^o): 37.43
  • Long. (^o): 138.83
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025938	Metagenome / Metatranscriptome	199	Y
F058560	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0179946_12691681	F058560	GAGG	MGKSDVRCPKCGKATNEVELIYPRTDDYEEKRVRAIICPHCLYVFSEPDDKKTNNSFRNEKQDIIKSD
Ga0179946_12691682	F025938	AGGAG	MVVIPDKIVDLLSAMFEDVRDKQFIIGDTLIEIVNATGDKGGTIAYLAGRLGVSASTLYDYYRIAKLWTPEYRAMYQALDWTIYRNADPNDPEDRALLDKCIDEGWSSVKFREEKYPALKDPNTIIGKMIALGKRIYEQDTLDIEQREAIHKAIGLLEEVMRELEVIEFADVKF