Scaffold Ga0180037_1256564

Overview

Basic Information

• Taxon OID: 3300019214
• Scaffold ID: Ga0180037_1256564
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - R.1189 metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2491
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.91
  • Depth (m): 9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067765	Metagenome / Metatranscriptome	125	N
F078667	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0180037_12565641	F067765	AGGA	MPTKNKDNLIHFPKIHSNPPINEESVSERIREYKESYSTELAEIIWENVLGEMARAGCEFDEDFERYFPSMILIFEAIRSLHLQTMGEEHQLQPFATQNVVVMDSNADQLSGGLKKNLEETIDIDEDL
Ga0180037_12565643	F078667	GAG	MIALTDKLQNLPKPNIINLAECKDRRSWTESEFSRHGLDDIKVHLYDRYEEGKSIPFAGDPDLIAQTTKGVTSSHLLTIKWWLENTDEEYGIFFEDDLDYEPLQYWNFTLKEYIDKCNQWEWGALQMCNVFEYPYDYKNEYIPFVPKKREMWDHGLQAYAIKRWYAEKLVEYYFGVFEDKIHYRMPLGSPVTTENNILHGFGLVISFPLFNHNITDFRSKNIYFYNEQAKAAVYSYEFIDLWWESKGIYLSLDEIFDNEREADKIYGVLE